Basic Information
Locus ID:
Sgl55142
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 47367157 | 47368356 | - | Sgl55142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 45,648.13 Da | 43.01 | 93.28 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 48 | 1.8E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 232 | 335 | 1.4E-4 | IPR006527 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 58 | 3.01E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 61 | 3.2E-8 | - |
| SMART | SM00256 | fbox_2 | 10 | 50 | 1.6E-10 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 143 | 340 | 5.6E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 50 | 10.133335 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_021754851.1 | F-box/kelch-repeat protein At3g06240-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803L060 | Protein DETOXIFICATION OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |