Basic Information
Locus ID:
Sgl55020
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 46696627 | 46704780 | - | Sgl55020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 154,093.05 Da | 45.25 | 68.45 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 774 | 813 | 1.28876E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 696 | 743 | 2.3E-17 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 959 | 1049 | 7.16E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 760 | 815 | 4.65E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 762 | 865 | 3.8E-18 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 411 | 423 | 71.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 773 | 814 | 2.2E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 815 | 874 | 18.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 161 | 173 | 0.25 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 237 | 249 | 13.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 75 | 87 | 8.7 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 771 | 816 | 9.632401 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 774 | 813 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 235 | 245 | 5.0E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 75 | 85 | 5.0E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 159 | 170 | 5.0E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1231 | 1253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1278 | 1299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1231 | 1252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 354 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology