Basic Information
Locus ID:
Sgl54905
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 45869535 | 45869993 | + | Sgl54905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 16,618.83 Da | 29.14 | 98.29 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 78 | 140 | 1.08159E-18 | IPR002048 |
| CDD | cd00051 | EFh | 3 | 62 | 1.08478E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 2 | 61 | 1.1E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 78 | 139 | 1.4E-11 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 140 | 2.29E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 70 | 146 | 7.4E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 69 | 4.7E-18 | - |
| SMART | SM00054 | efh_1 | 114 | 142 | 3.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 3 | 31 | 0.0049 | IPR002048 |
| SMART | SM00054 | efh_1 | 39 | 67 | 0.52 | IPR002048 |
| SMART | SM00054 | efh_1 | 78 | 106 | 5.4E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 110 | 145 | 12.086506 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 35 | 70 | 10.608049 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1 | 34 | 14.206556 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 74 | 109 | 14.931837 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 87 | 99 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 123 | 135 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 48 | 60 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 12 | 24 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021731344.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8BBV0 | Calcium-binding protein CML15 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g127070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology