Basic Information
Locus ID:
Sgl54777
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 45065742 | 45069354 | - | Sgl54777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 50,196.80 Da | 30.85 | 84.88 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 191 | 220 | 1.7E-7 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 390 | 421 | 4.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 220 | 2.6E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 329 | 427 | 4.29E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 316 | 427 | 6.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 227 | 1.6E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 345 | 420 | 7.3E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 149 | 221 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 219 | 9.361642 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 421 | 10.409105 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 388 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021866525.1 | uncharacterized RING finger protein ZK637.14-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A8N4EZ76 | E3 ubiquitin-protein ligase MPSR1-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109505986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004708 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54776, Sgl54777, Sgl60079 |