Basic Information
Locus ID:
Sgl54733
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
pentatricopeptide repeat-containing protein At1g74400
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 44774958 | 44779617 | - | Sgl54733 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 128,628.17 Da | 35.06 | 98.48 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 887 | 911 | 0.034 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 332 | 380 | 3.2E-14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 472 | 521 | 5.3E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 915 | 942 | 9.7E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 785 | 807 | 0.28 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 814 | 839 | 0.012 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 960 | 986 | 0.076 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 556 | 601 | 4.2E-11 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 404 | 450 | 6.0E-16 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 295 | 325 | 1.9E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 161 | 205 | 6.3E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 227 | 276 | 1.2E-15 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 736 | 920 | 1.37E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 873 | 948 | 9.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 208 | 315 | 9.6E-33 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 426 | 549 | 6.5E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 550 | 694 | 5.0E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 949 | 1102 | 2.8E-19 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 23 | 207 | 1.8E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 316 | 425 | 6.5E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 711 | 872 | 1.3E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 558 | 591 | 3.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 300 | 334 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 370 | 402 | 6.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 230 | 263 | 1.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 195 | 229 | 6.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 161 | 194 | 2.1E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 915 | 943 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 265 | 299 | 1.4E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 440 | 474 | 4.7E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 813 | 846 | 2.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 336 | 368 | 5.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 510 | 534 | 4.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 406 | 438 | 7.4E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 475 | 509 | 1.9E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | 13.109773 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | 11.8273 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 913 | 947 | 9.350046 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | 11.005202 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 438 | 472 | 12.123256 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 263 | 297 | 11.73961 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 193 | 227 | 11.465577 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 556 | 590 | 11.761533 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 811 | 845 | 9.437737 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 158 | 192 | 10.829822 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 228 | 262 | 11.717688 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | 10.303679 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | 10.785976 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74400.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010678476.1 | putative pentatricopeptide repeat-containing protein At1g74400 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9CA73 | Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L9A5 | Pentatricopeptide repeat-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13806 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000813 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114330 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004662 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54733, Sgl60034 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0021740 |
| Apiaceae | Apium graveolens | 1 | Ag4G00372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G002100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714846 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G10467 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G74400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018864m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g29560.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g047950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1743 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1920 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05480 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2665, evm.TU.LG14.1799 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11930 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632922 |
| Solanaceae | Solanum chilense | 1 | SOLCI000669400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012932 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10188 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09680.v3.1 |