Basic Information
Locus ID:
Sgl54536
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
B3 domain-containing transcription factor VRN1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 43423937 | 43424701 | + | Sgl54536 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 26,156.71 Da | 40.62 | 71.50 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 27 | 115 | 1.32812E-7 | IPR003340 |
| Pfam | PF02362 | B3 DNA binding domain | 38 | 115 | 1.2E-7 | IPR003340 |
| SUPERFAMILY | SSF68906 | SAP domain | 170 | 205 | 3.66E-5 | IPR036361 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 26 | 116 | 2.16E-14 | IPR015300 |
| Gene3D | G3DSA:2.40.330.10 | - | 19 | 118 | 1.2E-16 | IPR015300 |
| SMART | SM01019 | B3_2 | 27 | 117 | 0.0021 | IPR003340 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 24 | 117 | 8.656151 | IPR003340 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 151 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_026434999.1 | B3 domain-containing transcription factor VRN1-like isoform X3 [Papaver somniferum] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||