Basic Information
Locus ID:
Sgl54533
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 43406847 | 43412539 | - | Sgl54533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 63,749.19 Da | 59.63 | 53.28 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 434 | 518 | 2.2E-18 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 534 | 565 | 6.5E-8 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 433 | 518 | 6.6E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 154 | - | - |
| Coils | Coil | Coil | 439 | 459 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021768735.1 | uncharacterized protein LOC110733032 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology