Basic Information
Locus ID:
Sgl54453
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 42748060 | 42765452 | - | Sgl54453 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 130,508.01 Da | 47.72 | 89.09 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 663 | 705 | 1.71979E-22 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 937 | 974 | 3.9E-6 | IPR000225 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 360 | 406 | 9.0E-12 | - |
| Pfam | PF00023 | Ankyrin repeat | 68 | 91 | 4.9E-4 | IPR002110 |
| Pfam | PF04564 | U-box domain | 659 | 730 | 7.5E-20 | IPR003613 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 2 | 121 | 2.02E-25 | IPR036770 |
| SUPERFAMILY | SSF48371 | ARM repeat | 902 | 1178 | 7.68E-47 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 354 | 407 | 1.2E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 657 | 733 | 6.06E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 658 | 732 | 7.5E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 1042 | 1189 | 9.2E-27 | IPR011989 |
| Gene3D | G3DSA:1.25.40.20 | - | 1 | 122 | 2.9E-25 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 421 | 8.7E-14 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 891 | 1041 | 6.9E-29 | IPR011989 |
| SMART | SM00185 | arm_5 | 1140 | 1180 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 1017 | 1057 | 3.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 1058 | 1097 | 0.022 | IPR000225 |
| SMART | SM00185 | arm_5 | 1098 | 1138 | 1.8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 662 | 725 | 7.1E-30 | IPR003613 |
| SMART | SM00185 | arm_5 | 976 | 1016 | 0.5 | IPR000225 |
| SMART | SM00248 | ANK_2a | 29 | 59 | 0.025 | IPR002110 |
| SMART | SM00185 | arm_5 | 935 | 975 | 0.01 | IPR000225 |
| SMART | SM00248 | ANK_2a | 65 | 94 | 0.015 | IPR002110 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 1069 | 1110 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 29 | 59 | 10.418106 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 29 | 62 | 10.926559 | IPR002110 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 1028 | 1070 | 10.5524 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 658 | 732 | 33.836567 | IPR003613 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 361 | 400 | 11.66311 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 65 | 97 | 12.95652 | IPR002110 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 946 | 988 | 9.3624 | IPR000225 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 65 | 97 | 11.585487 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 882 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 786 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 850 | 882 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 822 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54790.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021770146.1 | U-box domain-containing protein 3-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8GWV5 | U-box domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PUB3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LF93 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8691 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19294 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000157 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121370 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31389, Sbi_jg57887 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026711 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54453, Sgl59793 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000007174, gene:ENSEOMG00000023422 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0026570, CQ.Regalona.r1.5BG0028100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016270 |
| Apiaceae | Apium graveolens | 1 | Ag10G00889 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720003 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.72.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G00324 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010139m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07650.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g065160.2N, BniB08g069050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1400 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6357, nbisL1-mrna-9712 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1343 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002266 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10270, Lb4G23512, Lb4G23513 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2923, evm.TU.LG02.1213, evm.TU.LG09.755 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g17010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1105 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11573 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10286 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.380 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9909 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19816 |
| Salicaceae | Populus euphratica | 3 | populus_peu15198, populus_peu15199, populus_peu32866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610533 |
| Solanaceae | Solanum chilense | 1 | SOLCI001666900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031342 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20338_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2422 |