halophFGD

Basic Information

Locus ID: Sgl54327

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Belongs to the universal ribosomal protein uS19 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA6	41822666	41827350	-	Sgl54327

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.56	66,206.80 Da	44.26	100.64	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	27	66	1.7E-6	IPR001810
Pfam	PF00203	Ribosomal protein S19	510	595	7.4E-32	IPR002222
SUPERFAMILY	SSF54570	Ribosomal protein S19	516	596	2.75E-28	IPR023575
SUPERFAMILY	SSF52047	RNI-like	104	336	7.06E-7	-
SUPERFAMILY	SSF81383	F-box domain	24	65	4.58E-10	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	15	68	2.3E-5	-
Gene3D	G3DSA:3.30.860.10	30s Ribosomal Protein S19; Chain A	468	612	7.5E-71	IPR023575
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	78	343	1.5E-5	IPR032675
SMART	SM00256	fbox_2	30	71	1.5E-4	IPR001810
TIGRFAM	TIGR01025	uS19_arch: ribosomal protein uS19	479	612	2.9E-69	IPR005713
ProSiteProfiles	PS50181	F-box domain profile.	24	72	9.312009	IPR001810
ProSitePatterns	PS00323	Ribosomal protein S19 signature.	565	589	-	IPR020934
PRINTS	PR00975	Ribosomal protein S19 family signature	577	592	2.1E-11	IPR002222
PRINTS	PR00975	Ribosomal protein S19 family signature	545	564	2.1E-11	IPR002222
PRINTS	PR00975	Ribosomal protein S19 family signature	565	577	2.1E-11	IPR002222
Hamap	MF_00531	30S ribosomal protein S19 [rpsS].	508	601	21.019388	IPR002222
Coils	Coil	Coil	338	338	-	-

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003723 (RNA binding) GO:0003735 (structural constituent of ribosome) GO:0005515 (protein binding)

Cellular Component:

GO:0005840 (ribosome) GO:0015935 (small ribosomal subunit)

KEGG Pathway

KO Term:

K02958 (small subunit ribosomal protein S15e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G04270.1	cytosolic ribosomal protein S15. Encodes cytosolic ribosomal protein S15.
RefSeq	XP_021843705.1	putative F-box/LRR-repeat protein At3g44080 [Spinacia oleracea]
Swiss-Prot	P31674	Small ribosomal subunit protein uS19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2
TrEMBL	A0A0K9QXF3	F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_135750 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg14286
Aizoaceae	Mesembryanthemum crystallinum	19	gene_10458, gene_11008, gene_11009, gene_12185, gene_13377 ... gene_18085, gene_19771, gene_20430, gene_20753, gene_22600, gene_25484, gene_26574, gene_4495, gene_5824, gene_6796, gene_7190, gene_7955, gene_8268, gene_9816
Amaranthaceae	Atriplex hortensis	17	Ah000293, Ah002139, Ah004307, Ah004880, Ah006498, Ah009144 ... Ah009922, Ah013218, Ah019945, Ah021738, Ah027810, Ah027812, Ah035382, Ah035438, Ah035658, Ah035664, Ah038416
Amaranthaceae	Beta vulgaris	4	BVRB_2g026260, BVRB_2g026340, BVRB_5g103430, BVRB_9g210070
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg21848, Sbi_jg39810, Sbi_jg40003, Sbi_jg40004 ... Sbi_jg40219, Sbi_jg50203, Sbi_jg5068, Sbi_jg6847
Amaranthaceae	Salicornia europaea	10	Seu_jg13014, Seu_jg14515, Seu_jg14517, Seu_jg14520 ... Seu_jg14522, Seu_jg14525, Seu_jg15901, Seu_jg15904, Seu_jg1803, Seu_jg18700
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00003750, GOSA_00004938, GOSA_00004941, GOSA_00008031 ... GOSA_00010662, GOSA_00023800, GOSA_00025850
Amaranthaceae	Suaeda glauca	24	Sgl01494, Sgl06619, Sgl06658, Sgl31341, Sgl35868, Sgl35890 ... Sgl36202, Sgl36672, Sgl38567, Sgl41183, Sgl41203, Sgl41483, Sgl41977, Sgl46756, Sgl54285, Sgl54327, Sgl55508, Sgl57500, Sgl59627, Sgl61358, Sgl73230, Sgl76747, Sgl78397, Sgl80898
Amaranthaceae	Chenopodium album	32	gene:ENSEOMG00000002363, gene:ENSEOMG00000004105 ... gene:ENSEOMG00000006869, gene:ENSEOMG00000010307, gene:ENSEOMG00000015059, gene:ENSEOMG00000019185, gene:ENSEOMG00000019442, gene:ENSEOMG00000020049, gene:ENSEOMG00000020961, gene:ENSEOMG00000023510, gene:ENSEOMG00000023809, gene:ENSEOMG00000024190, gene:ENSEOMG00000025614, gene:ENSEOMG00000025669, gene:ENSEOMG00000029442, gene:ENSEOMG00000030111, gene:ENSEOMG00000031474, gene:ENSEOMG00000036234, gene:ENSEOMG00000037364, gene:ENSEOMG00000037634, gene:ENSEOMG00000037917, gene:ENSEOMG00000038626, gene:ENSEOMG00000038757, gene:ENSEOMG00000039284, gene:ENSEOMG00000039469, gene:ENSEOMG00000039764, gene:ENSEOMG00000048859, gene:ENSEOMG00000051065, gene:ENSEOMG00000051359, gene:ENSEOMG00000051524, gene:ENSEOMG00000051670, gene:ENSEOMG00000051752
Amaranthaceae	Chenopodium quinoa	32	CQ.Regalona.r1.1BG0009980, CQ.Regalona.r1.1BG0010980 ... CQ.Regalona.r1.1BG0012100, CQ.Regalona.r1.2AG0009460, CQ.Regalona.r1.2AG0009470, CQ.Regalona.r1.2AG0017320, CQ.Regalona.r1.2AG0017540, CQ.Regalona.r1.2AG0017560, CQ.Regalona.r1.2AG0017620, CQ.Regalona.r1.2AG0017630, CQ.Regalona.r1.2AG0017640, CQ.Regalona.r1.2AG0017680, CQ.Regalona.r1.2AG0017700, CQ.Regalona.r1.2AG0019710, CQ.Regalona.r1.2AG0019720, CQ.Regalona.r1.2BG0019280, CQ.Regalona.r1.3BG0012500, CQ.Regalona.r1.4BG0001390, CQ.Regalona.r1.5AG0025440, CQ.Regalona.r1.5BG0018730, CQ.Regalona.r1.5BG0025440, CQ.Regalona.r1.5BG0027000, CQ.Regalona.r1.5BG0027890, CQ.Regalona.r1.6BG0022870, CQ.Regalona.r1.7AG0006180, CQ.Regalona.r1.7AG0014150, CQ.Regalona.r1.7AG0014170, CQ.Regalona.r1.7BG0003280, CQ.Regalona.r1.9AG0000620, CQ.Regalona.r1.9AG0004540, CQ.Regalona.r1.9BG0006070, CQ.Regalona.r1.9BG0017700
Anacardiaceae	Pistacia vera	2	pistato.v30066350, pistato.v30138040
Apiaceae	Apium graveolens	2	Ag5G00998, Ag5G01801
Arecaceae	Cocos nucifera	2	COCNU_05G005250, scaffold003886G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103698306, gene-LOC103723046
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.3428.V1.1, AsparagusV1_04.222.V1.1 ... AsparagusV1_05.3351.V1.1
Asteraceae	Flaveria trinervia	1	Ftri9G10297
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g33070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.1020
Plantaginaceae	Plantago ovata	38	Pov_00000480, Pov_00000484, Pov_00000485, Pov_00000490 ... Pov_00000494, Pov_00000495, Pov_00000537, Pov_00000582, Pov_00004013, Pov_00005306, Pov_00010869, Pov_00011608, Pov_00012977, Pov_00013098, Pov_00013101, Pov_00013107, Pov_00016009, Pov_00016011, Pov_00016012, Pov_00016013, Pov_00016015, Pov_00017961, Pov_00019051, Pov_00022904, Pov_00022962, Pov_00023248, Pov_00027570, Pov_00029107, Pov_00029375, Pov_00031439, Pov_00032266, Pov_00032267, Pov_00033445, Pov_00035481, Pov_00037471, Pov_00037494, Pov_00038395, Pov_00040721
Poaceae	Echinochloa crus-galli	41	AH01.2649, AH01.431, AH01.4703, AH02.2603, AH06.628 ... AH06.686, AH07.426, AH07.606, AH07.651, BH01.1015, BH02.4540, BH04.191, BH05.127, BH05.130, BH05.131, BH06.692, BH06.758, BH07.551, BH08.243, BH08.247, BH08.253, CH01.1627, CH01.3196, CH01.851, CH02.4589, CH02.4590, CH02.953, CH04.1058, CH05.4547, CH06.714, CH06.784, CH06.788, CH07.1956, CH07.1957, CH07.1960, CH07.572, CH08.1310, CH08.1321, CH08.298, CH08.299, CH08.617
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2BG0164360, gene-QOZ80_2BG0171640 ... gene-QOZ80_3BG0285080, gene-QOZ80_4BG0329700, gene-QOZ80_4BG0345030, gene-QOZ80_5BG0426990, gene-QOZ80_6AG0512710, gene-QOZ80_6BG0464650, gene-QOZ80_8BG0646790
Poaceae	Hordeum vulgare	15	HORVU.MOREX.r3.2HG0215140.1, HORVU.MOREX.r3.2HG0215160.1 ... HORVU.MOREX.r3.3HG0231750.1, HORVU.MOREX.r3.3HG0251800.1, HORVU.MOREX.r3.3HG0251810.1, HORVU.MOREX.r3.3HG0297910.1, HORVU.MOREX.r3.5HG0535940.1, HORVU.MOREX.r3.5HG0535970.1, HORVU.MOREX.r3.5HG0535980.1, HORVU.MOREX.r3.5HG0536050.1, HORVU.MOREX.r3.7HG0668640.1, HORVU.MOREX.r3.7HG0746750.1, HORVU.MOREX.r3.7HG0746760.1, HORVU.MOREX.r3.7HG0746900.1, HORVU.MOREX.r3.7HG0751350.1
Poaceae	Lolium multiflorum	28	gene-QYE76_001889, gene-QYE76_004900, gene-QYE76_016296 ... gene-QYE76_025254, gene-QYE76_026063, gene-QYE76_027412, gene-QYE76_027421, gene-QYE76_027439, gene-QYE76_030244, gene-QYE76_030245, gene-QYE76_032875, gene-QYE76_036254, gene-QYE76_036404, gene-QYE76_036798, gene-QYE76_047527, gene-QYE76_051589, gene-QYE76_056241, gene-QYE76_056245, gene-QYE76_056248, gene-QYE76_057193, gene-QYE76_059178, gene-QYE76_059683, gene-QYE76_068096, gene-QYE76_069025, gene-QYE76_069921, gene-QYE76_069922, gene-QYE76_070032, gene-QYE76_070280
Poaceae	Oryza coarctata	29	Oco01G027380, Oco03G004350, Oco05G014380, Oco06G011870 ... Oco06G023840, Oco07G005010, Oco07G019170, Oco08G005040, Oco11G004680, Oco11G004690, Oco11G017340, Oco12G004730, Oco12G004740, Oco13G001770, Oco13G001810, Oco13G001820, Oco13G007450, Oco14G001800, Oco14G001810, Oco14G001890, Oco14G001910, Oco14G001930, Oco15G003390, Oco17G005950, Oco17G009810, Oco20G000340, Oco20G000350, Oco22G007870, Ocoptg000061lG000130
Poaceae	Oryza sativa	23	LOC_Os01g37260.2, LOC_Os03g25394.1, LOC_Os03g40060.1 ... LOC_Os03g50470.1, LOC_Os03g51270.1, LOC_Os04g36910.1, LOC_Os06g06600.1, LOC_Os06g10140.1, LOC_Os06g10290.1, LOC_Os06g10300.1, LOC_Os06g49930.1, LOC_Os06g50250.1, LOC_Os07g06500.1, LOC_Os07g06670.1, LOC_Os07g06730.1, LOC_Os07g06900.1, LOC_Os07g22910.1, LOC_Os07g26000.1, LOC_Os08g25650.1, LOC_Os11g33310.1, LOC_Os11g33320.1, LOC_Os11g47660.1, LOC_Os12g03390.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G195100, gene-BS78_01G412100, gene-BS78_K140400 ... gene-BS78_02G140400, gene-BS78_03G047400, gene-BS78_03G183000, gene-BS78_03G321400, gene-BS78_04G066200, gene-BS78_05G149800, gene-BS78_05G159500, gene-BS78_05G159600, gene-BS78_06G288100, gene-BS78_07G025300, gene-BS78_08G004500, gene-BS78_08G007700, gene-BS78_08G007900, gene-BS78_08G008300, gene-BS78_09G231600, gene-BS78_10G030000, gene-BS78_10G079300, gene-BS78_10G079600
Poaceae	Puccinellia tenuiflora	41	Pt_Chr0101613, Pt_Chr0101693, Pt_Chr0103204, Pt_Chr0106725 ... Pt_Chr0201245, Pt_Chr0201248, Pt_Chr0201251, Pt_Chr0201255, Pt_Chr0201286, Pt_Chr0202916, Pt_Chr0204883, Pt_Chr0205054, Pt_Chr0206942, Pt_Chr0207083, Pt_Chr0207084, Pt_Chr0207559, Pt_Chr0300469, Pt_Chr0300470, Pt_Chr0300494, Pt_Chr0302737, Pt_Chr0302782, Pt_Chr0302785, Pt_Chr0303592, Pt_Chr0303618, Pt_Chr0305041, Pt_Chr0306918, Pt_Chr0306923, Pt_Chr0306929, Pt_Chr0306930, Pt_Chr0306931, Pt_Chr0401232, Pt_Chr0401305, Pt_Chr0401646, Pt_Chr0401698, Pt_Chr0401714, Pt_Chr0404871, Pt_Chr0405073, Pt_Chr0405074, Pt_Chr0405929, Pt_Chr0600341, Pt_Chr0600382
Poaceae	Sporobolus alterniflorus	21	Chr04G000310, Chr04G033040, Chr07G000360, Chr07G010450 ... Chr07G032150, Chr11G020680, Chr11G020710, Chr17G008270, Chr17G008280, Chr17G008290, Chr17G008300, Chr20G001960, Chr20G012140, Chr20G012160, Chr23G014440, Chr23G014460, Chr24G001090, Chr26G005350, Chr28G001280, Chr29G002300, Chr29G010550
Poaceae	Thinopyrum elongatum	37	Tel1E01G622400, Tel1E01G729800, Tel2E01G1003200 ... Tel2E01G1003600, Tel2E01G1004100, Tel2E01G1004500, Tel2E01G1006300, Tel2E01G1006400, Tel2E01G636300, Tel2E01G830900, Tel2E01G832000, Tel3E01G296800, Tel3E01G297200, Tel3E01G419300, Tel3E01G588500, Tel3E01G651900, Tel3E01G803500, Tel4E01G467300, Tel4E01G646500, Tel5E01G070500, Tel5E01G070900, Tel5E01G105300, Tel5E01G874600, Tel5E01G874900, Tel6E01G627800, Tel6E01G627900, Tel6E01G628200, Tel6E01G787400, Tel7E01G1011200, Tel7E01G327900, Tel7E01G370200, Tel7E01G921100, Tel7E01G921200, Tel7E01G921900, Tel7E01G923400, Tel7E01G925800, Tel7E01G926000
Poaceae	Triticum dicoccoides	32	gene_TRIDC1AG056050, gene_TRIDC1AG063360 ... gene_TRIDC1BG019520, gene_TRIDC1BG027100, gene_TRIDC1BG028300, gene_TRIDC2AG053030, gene_TRIDC2AG058880, gene_TRIDC2AG058890, gene_TRIDC2BG056000, gene_TRIDC3AG053170, gene_TRIDC3BG059860, gene_TRIDC4AG048790, gene_TRIDC4AG048800, gene_TRIDC5AG004230, gene_TRIDC5BG004390, gene_TRIDC5BG082070, gene_TRIDC5BG082140, gene_TRIDC6AG004090, gene_TRIDC6AG053150, gene_TRIDC6BG061690, gene_TRIDC7AG020180, gene_TRIDC7AG020270, gene_TRIDC7AG020280, gene_TRIDC7AG020300, gene_TRIDC7AG025110, gene_TRIDC7AG025550, gene_TRIDC7AG073970, gene_TRIDC7AG074000, gene_TRIDC7AG074120, gene_TRIDC7BG010200, gene_TRIDC7BG015940, gene_TRIDC7BG070460
Poaceae	Triticum aestivum	83	TraesCS1A02G381300.1, TraesCS1A02G431800.1 ... TraesCS1B02G132200.1, TraesCS1B02G165100.1, TraesCS1B02G171100.2, TraesCS1B02G467400.1, TraesCS1D02G113500.1, TraesCS1D02G313200.1, TraesCS1D02G441100.4, TraesCS2A02G366400.1, TraesCS2A02G407800.1, TraesCS2A02G575000.1, TraesCS2A02G575300.1, TraesCS2B02G611900.2, TraesCS2B02G612000.1, TraesCS2D02G586000.2, TraesCS3A02G369800.1, TraesCS3A02G386700.1, TraesCS3B02G198600.1, TraesCS3B02G401700.1, TraesCS3B02G422100.1, TraesCS3D02G081600.1, TraesCS3D02G173900.1, TraesCS3D02G382400.1, TraesCS4A02G322700.1, TraesCS4A02G322800.1, TraesCS4A02G322900.1, TraesCS4A02G323000.1, TraesCS4A02G323200.1, TraesCS4A02G323300.1, TraesCS4A02G462700.1, TraesCS4B02G258700.2, TraesCS4B02G258800.1, TraesCS4B02G259000.1, TraesCS4B02G397200.1, TraesCS5A02G029500.1, TraesCS5B02G027900.1, TraesCS5B02G028100.1, TraesCS5B02G044900.1, TraesCS5B02G050000.1, TraesCS5B02G050100.1.cds1, TraesCS5B02G555200.1, TraesCS5B02G555300.1, TraesCS5B02G555400.1, TraesCS5B02G555500.1, TraesCS5B02G555600.1, TraesCS5B02G555700.1, TraesCS5D02G037200.1, TraesCS5D02G049900.1, TraesCS5D02G055900.1, TraesCS6A02G033900.1, TraesCS6A02G353300.1, TraesCS6A02G373100.1, TraesCS6B02G047500.1, TraesCS6B02G386000.1, TraesCS6D02G039400.2, TraesCS6D02G039700.1, TraesCS6D02G335700.1, TraesCS7A02G163000.1, TraesCS7A02G163100.1, TraesCS7A02G163200.1, TraesCS7A02G198500.1, TraesCS7A02G202000.2, TraesCS7A02G529600.1, TraesCS7A02G529700.1, TraesCS7B02G068500.1, TraesCS7B02G068900.1, TraesCS7B02G069000.1, TraesCS7B02G104000.1, TraesCS7B02G108800.1, TraesCS7B02G405900.1, TraesCS7B02G446300.1, TraesCS7B02G446700.1, TraesCS7B02G446800.2, TraesCS7D02G165200.1.cds1, TraesCS7D02G205100.1, TraesCS7D02G517100.1, TraesCS7D02G517400.2, TraesCS7D02G517500.2, TraesCS7D02G517700.2, TraesCS7D02G518700.1, TraesCS7D02G537700.1, TraesCSU02G029500.1
Poaceae	Zea mays	4	Zm00001eb066980_P001, Zm00001eb066990_P001 ... Zm00001eb067000_P001, Zm00001eb067010_P001
Poaceae	Zoysia japonica	3	nbis-gene-17448, nbis-gene-37439, nbis-gene-39147
Poaceae	Zoysia macrostachya	3	Zma_g20834, Zma_g22437, Zma_g22438
Portulacaceae	Portulaca oleracea	3	evm.TU.LG01.2856, evm.TU.LG02.511, evm.TU.LG09.1755
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.1220, evm.TU.Scaffold_6_RagTag.353
Rhizophoraceae	Carallia pectinifolia	17	nbisL1-mrna-12368, nbisL1-mrna-15199, nbisL1-mrna-15212 ... nbisL1-mrna-15213, nbisL1-mrna-15217, nbisL1-mrna-15240, nbisL1-mrna-19276, nbisL1-mrna-19547, nbisL1-mrna-19558, nbisL1-mrna-19588, nbisL1-mrna-19592, nbisL1-mrna-19665, nbisL1-mrna-19668, nbisL1-mrna-22697, nbisL1-mrna-22698, nbisL1-mrna-23267, nbisL1-mrna-4238
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-14514, nbisL1-mrna-5921
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17017, nbisL1-mrna-4956
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.479, add.evm.TU.utg000008l.481 ... add.evm.TU.utg000013l.137, evm.TU.utg000023l.261
Rhizophoraceae	Kandelia obovata	2	Maker00006285, Maker00009125
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16358, nbisL1-mrna-17009, nbisL1-mrna-21425 ... nbisL1-mrna-630
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-17255, nbisL1-mrna-17257, nbisL1-mrna-17259 ... nbisL1-mrna-17261, nbisL1-mrna-17262, nbisL1-mrna-17264, nbisL1-mrna-8821
Salicaceae	Populus euphratica	11	populus_peu02394, populus_peu03614, populus_peu05442 ... populus_peu08713, populus_peu08714, populus_peu08718, populus_peu25171, populus_peu25174, populus_peu25552, populus_peu25557, populus_peu28783
Solanaceae	Lycium barbarum	5	gene-LOC132601448, gene-LOC132601626, gene-LOC132612930 ... gene-LOC132614425, gene-LOC132631323
Solanaceae	Solanum chilense	3	SOLCI002197600, SOLCI003375000, SOLCI007094100
Solanaceae	Solanum pennellii	4	gene-LOC107006362, gene-LOC107015627, gene-LOC107017004 ... gene-LOC107017005
Tamaricaceae	Reaumuria soongarica	4	MSTRG.19954_chr11_+, MSTRG.20796_chr11_-, MSTRG.9786_chr05_- ... STRG.12791_chr02_-
Tamaricaceae	Tamarix chinensis	2	TC08G2438, TC08G2562