Basic Information
Locus ID:
Sgl54320
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 41775904 | 41782106 | - | Sgl54320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 164,647.45 Da | 50.75 | 79.16 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1293 | 1412 | 3.31189E-31 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 1293 | 1414 | 2.4E-21 | IPR002156 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 85 | 222 | 5.9E-26 | IPR025558 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1100 | 1183 | 1.8E-12 | IPR026960 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1291 | 1418 | 1.9E-14 | IPR012337 |
| SUPERFAMILY | SSF56219 | DNase I-like | 657 | 853 | 1.96E-20 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 657 | 854 | 5.3E-22 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1291 | 1418 | 2.8E-15 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1286 | 1416 | 9.210294 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 540 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019107211.1 | uncharacterized protein LOC109136048 [Beta vulgaris subsp. vulgaris] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LKW3 | Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||