Basic Information
Locus ID:
Sgl54107
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 39787077 | 39791460 | + | Sgl54107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 118,378.74 Da | 46.59 | 57.15 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 509 | 824 | 8.68663E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 798 | 824 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 654 | 690 | 0.0087 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 611 | 648 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 511 | 542 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 505 | 828 | 7.66E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 406 | 576 | 1.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 602 | 852 | 1.9E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 692 | 731 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 782 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 543 | 6.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 690 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 783 | 824 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 648 | 4.5E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 511 | 545 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 616 | 651 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 657 | 691 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 616 | 657 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 801 | 824 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 511 | 552 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 657 | 691 | 10.416506 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 530 | 544 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 635 | 649 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 635 | 649 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 530 | 544 | 2.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 903 | 937 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 196 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010677871.1 | WD repeat-containing protein 44 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology