Basic Information
Locus ID:
Sgl54088
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 39661794 | 39666977 | - | Sgl54088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 171,382.58 Da | 47.96 | 80.73 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1342 | 1462 | 4.00054E-27 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 820 | 1002 | 1.97558E-38 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 825 | 991 | 7.8E-29 | IPR000477 |
| Pfam | PF03372 | Endonuclease/Exonuclease/phosphatase family | 329 | 551 | 7.0E-9 | IPR005135 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1156 | 1239 | 4.1E-14 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 1343 | 1464 | 5.8E-20 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 774 | 989 | 1.25E-9 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 326 | 556 | 8.9E-31 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1341 | 1466 | 1.39E-12 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1340 | 1470 | 1.5E-13 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 325 | 557 | 4.4E-31 | IPR036691 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1361 | 1466 | 9.467882 | IPR002156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 69 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P16423 | Retrovirus-related Pol polyprotein from type-2 retrotransposable element R2DM OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EFY0 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||