Basic Information
Locus ID:
Sgl53851
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 36994341 | 37006411 | + | Sgl53851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.08 | 42,099.86 Da | 57.16 | 73.77 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 340 | 366 | 2.7E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 305 | 333 | 3.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 299 | 334 | 1.49E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 335 | 366 | 3.77E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 257 | 294 | 9.4E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 336 | 367 | 7.8E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 299 | 335 | 1.4E-12 | - |
| SMART | SM00547 | zf_4 | 267 | 291 | 9.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 340 | 364 | 2.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 307 | 331 | 6.9E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 265 | 294 | 9.314576 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 305 | 334 | 10.161491 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 338 | 367 | 9.788849 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 269 | 288 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 342 | 361 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021839796.1 | zinc finger protein VAR3, chloroplastic-like [Spinacia oleracea] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology