Basic Information
Locus ID:
Sgl52510
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 11048949 | 11063266 | + | Sgl52510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 79,795.57 Da | 46.91 | 86.86 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 283 | 419 | 1.07441E-72 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 74 | 282 | 4.18481E-125 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 94 | 262 | 2.7E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 315 | 409 | 2.1E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 422 | 477 | 3.3E-11 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 606 | 668 | 4.4E-7 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 131 | 425 | 1.23E-55 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 605 | 671 | 1.0E-4 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 483 | 583 | 1.3E-24 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 283 | 480 | 2.7E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 602 | 671 | 4.4E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 51 | 282 | 2.1E-89 | IPR027417 |
| SMART | SM00487 | ultradead3 | 88 | 291 | 3.6E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 329 | 410 | 3.4E-28 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 85 | 510 | 6.5E-162 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 100 | 275 | 22.775801 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 599 | 678 | 11.615099 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 300 | 449 | 20.527481 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 702 | - | - |
| Coils | Coil | Coil | 3 | 48 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021862388.1 | mediator of RNA polymerase II transcription subunit 34 [Spinacia oleracea] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology