Basic Information
Locus ID:
Sgl52388
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 10072590 | 10073546 | + | Sgl52388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 36,964.34 Da | 48.41 | 58.55 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1 | 77 | 7.8E-12 | - |
| Pfam | PF00098 | Zinc knuckle | 149 | 164 | 9.5E-5 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 131 | 171 | 6.11E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 142 | 188 | 1.2E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 149 | 165 | 0.0029 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 150 | 164 | 9.48789 | IPR001878 |
| Coils | Coil | Coil | 291 | 311 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021759476.1 | uncharacterized protein LOC110724344 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A1Q3BE17 | Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_09573 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |