Basic Information
Locus ID:
Sgl52209
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 8711262 | 8719760 | - | Sgl52209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 43,843.44 Da | 51.57 | 80.28 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 338 | 380 | 4.80065E-15 | - |
| Pfam | PF13639 | Ring finger domain | 337 | 380 | 6.1E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 27 | 98 | 8.6E-13 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 383 | 5.71E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 385 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 338 | 379 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 338 | 380 | 12.69582 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010676294.2 | RING-H2 finger protein ATL22 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LWI7 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology