Basic Information
Locus ID:
Sgl52064
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 7565433 | 7568156 | + | Sgl52064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 103,479.57 Da | 38.39 | 87.39 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 47 | 316 | 2.81231E-54 | - |
| CDD | cd06222 | RNase_H_like | 784 | 894 | 8.21808E-14 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 786 | 897 | 8.6E-10 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 53 | 284 | 2.6E-43 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 577 | 664 | 1.4E-19 | IPR026960 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 781 | 890 | 1.39E-7 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 5 | 303 | 1.45E-17 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 782 | 907 | 1.2E-8 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 34 | 316 | 14.861325 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P08548 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |