Basic Information
Locus ID:
Sgl52016
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 7130506 | 7133701 | + | Sgl52016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 36,423.28 Da | 52.30 | 86.89 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 191 | 239 | 6.98E-6 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 200 | 264 | 2.0E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 331 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45860.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 4. Encodes a cysteine-rich receptor-like protein kinase. Involved in programmed cell death and defense response to pathogen. | 0 |
| RefSeq | XP_030968435.1 | cysteine-rich receptor-like protein kinase 10 isoform X1 [Quercus lobata] | 0 |
| Q9LZU4 | Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana OX=3702 GN=CRK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S2AVL2 | Genome assembly, chromosome: 7 OS=Arabidopsis arenosa OX=38785 GN=AARE701A_LOCUS18689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23877, Sbi_jg23880, Sbi_jg23881, Sbi_jg23882 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12317, Seu_jg12318, Seu_jg12319, Seu_jg12322 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl43696, Sgl48465, Sgl52016, Sgl52017, Sgl52041, Sgl57319 ... |