Basic Information
Locus ID:
Sgl51942
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 6485806 | 6486345 | + | Sgl51942 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 20,374.08 Da | 35.98 | 74.47 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 127 | 168 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 174 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 178 | 5.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 167 | 6.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 168 | 12.356501 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048501114.1 | probable E3 ubiquitin-protein ligase XERICO [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A438KGP9 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_004522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001239 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51942, Sgl57235 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.995 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30026 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11142 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16358, nbisL1-mrna-19379 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000015l.250 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015563, Maker00018053 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18522, nbisL1-mrna-18902 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11609, nbisL1-mrna-20799 |
| Salicaceae | Populus euphratica | 1 | populus_peu36050 |