Basic Information
Locus ID:
Sgl51869
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
SOC1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 5856570 | 5864701 | - | Sgl51869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 27,266.86 Da | 45.04 | 84.30 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 1.42953E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 8.0E-28 | IPR002100 |
| Pfam | PF01486 | K-box region | 103 | 191 | 1.2E-22 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 74 | 7.59E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 90 | 5.9E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.1E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.734966 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 107 | 197 | 12.982228 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 4.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 4.5E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 4.5E-30 | IPR002100 |
| Coils | Coil | Coil | 144 | 190 | - | - |
| Coils | Coil | Coil | 107 | 134 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_021844484.1 | agamous-like MADS-box protein AGL19 [Spinacia oleracea] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXL2 | MADS-box protein OS=Spinacia oleracea OX=3562 GN=SOVF_023090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology