Basic Information
Locus ID:
Sgl51465
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 2529246 | 2530861 | + | Sgl51465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 48,387.92 Da | 45.09 | 99.66 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 4.04701E-24 | - |
| Pfam | PF04564 | U-box domain | 9 | 89 | 2.3E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 95 | 5.1E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 123 | 419 | 2.79E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 96 | 6.4E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 110 | 421 | 2.0E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 89 | 2.9E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 96 | 27.511892 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 307 | 350 | 9.7474 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010677541.1 | E3 ubiquitin-protein ligase PUB23 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QP36 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_157660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology