Basic Information
Locus ID:
Sgl51464
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 2521881 | 2523546 | - | Sgl51464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 47,117.59 Da | 46.51 | 108.89 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 8.36782E-23 | - |
| Pfam | PF04564 | U-box domain | 9 | 84 | 1.7E-16 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 102 | 234 | 2.73E-5 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 87 | 1.19E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 402 | 1.44E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 92 | 1.0E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 99 | 411 | 1.3E-18 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 12 | 82 | 5.2E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 89 | 31.961281 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 290 | 333 | 10.2724 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021771284.1 | E3 ubiquitin-protein ligase PUB23-like [Chenopodium quinoa] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QP36 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_157660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology