Basic Information
Locus ID:
Sgl51351
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 1844270 | 1845874 | - | Sgl51351 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.12 | 15,240.64 Da | 73.43 | 53.82 | -0.86 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.4 | - | 0 |
| RefSeq | XP_021771232.1 | E3 ubiquitin-protein ligase RHF2A-like [Chenopodium quinoa] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QED6 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_193840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16404, jg31892, jg32747, jg37647 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2324, gene_5741 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003059, Ah027756 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171410 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1464, Sbi_jg35095, Sbi_jg56572 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13793, Seu_jg3275 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001891, GOSA_00003442 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl51351, Sgl51352, Sgl56599, Sgl72703, Sgl76242 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006197, gene:ENSEOMG00000023043 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011460, CQ.Regalona.r1.5BG0011930 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055540, pistato.v30276980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01715 |
| Arecaceae | Cocos nucifera | 1 | scaffold000920G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707430, gene-LOC103713514 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.3384.V1.1, AsparagusV1_03.426.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G14422, Ftri17G16089, Ftri2G30828 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G22000.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23190.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g041550.2N, BniB05g042170.2N, BniB05g069060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1250, Ceq05G1533 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1411, Cgl05G1532 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g02990, gene.Thate08g10200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2376, nbisL1-mrna-443 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1872 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003631, Pov_00015721, Pov_00026566 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14696, Lb3G19279 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.148, AH03.289, AH04.1690, BH03.370, BH03.3893, CH01.455 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0213230, gene-QOZ80_3BG0258370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0150530.1, HORVU.MOREX.r3.4HG0364570.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042582, gene-QYE76_066487 |
| Poaceae | Oryza coarctata | 4 | Oco05G025630, Oco06G026470, Oco21G007430, Oco22G008610 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57500.1, LOC_Os11g36430.3 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G055900, gene-BS78_02G040400 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0303559, Pt_Chr0303567, Pt_Chr0307545 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003220, Chr07G015990, Chr07G029270, Chr12G035110 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G460200, Tel4E01G276300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG033740, gene_TRIDC2BG038280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G248400.1, TraesCS2B02G268800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb117350_P002, Zm00001eb200150_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15299, nbis-gene-16425 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g18091, Zma_g18983, Zma_g2608, Zma_g326 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1102, evm.TU.LG24.1104 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00300 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_12_RagTag.489, evm.TU.Scaffold_13_RagTag.563 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24254, nbisL1-mrna-30507, nbisL1-mrna-4108 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11240, nbisL1-mrna-14679, nbisL1-mrna-18143 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10181, nbisL1-mrna-15948, nbisL1-mrna-19744 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.598, evm.TU.utg000015l.300 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00005722, Maker00015834, Maker00016329, Maker00017965 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-12508, nbisL1-mrna-4218, nbisL1-mrna-5716 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11969, nbisL1-mrna-13488, nbisL1-mrna-15231 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu02487, populus_peu02493, populus_peu12382 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132603782, gene-LOC132603787, gene-LOC132607249 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002726900, SOLCI002727100, SOLCI005759800 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002584, gene-LOC107023449, gene-LOC107023819 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13233, gene_3025 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1285 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30590.v3.1 |