Basic Information
Locus ID:
Sgl51256
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 1201131 | 1205664 | + | Sgl51256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 113,436.13 Da | 34.43 | 101.82 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 770 | 990 | 3.12515E-126 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 453 | 747 | 3.14524E-91 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 146 | 346 | 3.09389E-113 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 464 | 699 | 6.0E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 164 | 298 | 9.8E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 789 | 937 | 2.0E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 764 | 998 | 8.78E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2 | 128 | 1.09E-10 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 142 | 361 | 3.0E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 454 | 754 | 1.03E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 130 | 1.8E-19 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 155 | 394 | 2.8E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 416 | 753 | 1.8E-51 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 755 | 1007 | 2.5E-80 | IPR027417 |
| SMART | SM00382 | AAA_5 | 173 | 346 | 1.7E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 798 | 990 | 7.0E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 112 | 15.498311 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 772 | 1006 | 16.019882 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 146 | 369 | 22.449089 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 455 | 735 | 30.795074 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 271 | 285 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 410 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_010691965.1 | putative ABC transporter C family member 15 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9R2A4 | ABC-type xenobiotic transporter OS=Spinacia oleracea OX=3562 GN=SOVF_114980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology