Basic Information
Locus ID:
Sgl51245
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 1154990 | 1158619 | + | Sgl51245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 33,689.53 Da | 47.17 | 82.68 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 217 | 290 | 4.4191E-13 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 59 | 116 | 3.5E-6 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 231 | 290 | 5.8E-9 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 38 | 123 | 2.73E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 129 | 202 | 6.34E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 231 | 290 | 3.34E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 5 | 124 | 3.1E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 215 | 290 | 1.8E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 204 | 1.3E-10 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_021754277.1 | uncharacterized protein LOC110719610 [Chenopodium quinoa] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9REE3 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |