Basic Information
Locus ID:
Sgl50934
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 58199991 | 58205749 | + | Sgl50934 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 170,896.11 Da | 43.76 | 90.93 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 451 | 719 | 9.09774E-52 | - |
| CDD | cd06222 | RNase_H_like | 1164 | 1287 | 3.5334E-28 | IPR044730 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 457 | 688 | 9.3E-38 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 973 | 1059 | 1.9E-15 | IPR026960 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1310 | 1362 | 2.7E-8 | IPR001245 |
| Pfam | PF13456 | Reverse transcriptase-like | 1165 | 1289 | 1.8E-19 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 13 | 199 | 2.45E-24 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 401 | 684 | 9.34E-16 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1162 | 1289 | 1.06E-11 | IPR012337 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1309 | 1429 | 3.12E-19 | IPR011009 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 199 | 1.8E-24 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1162 | 1288 | 1.8E-14 | IPR036397 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1289 | 1423 | 2.8E-24 | - |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 438 | 719 | 14.184858 | IPR000477 |
| Coils | Coil | Coil | 287 | 307 | - | - |
| Coils | Coil | Coil | 261 | 281 | - | - |
| Coils | Coil | Coil | 1141 | 1161 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23130.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 5. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P14381 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |