Basic Information
Locus ID:
Sgl50880
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 57856287 | 57864511 | - | Sgl50880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 70,515.70 Da | 40.14 | 83.05 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00314 | Thaumatin family | 119 | 296 | 2.1E-44 | IPR001938 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 416 | 500 | 1.7E-16 | IPR001245 |
| Pfam | PF00232 | Glycosyl hydrolase family 1 | 10 | 135 | 1.9E-27 | IPR001360 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 11 | 135 | 3.89E-36 | IPR017853 |
| SUPERFAMILY | SSF49870 | Osmotin, thaumatin-like protein | 108 | 296 | 5.49E-46 | IPR037176 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 618 | 6.47E-38 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 373 | 487 | 9.9E-39 | - |
| Gene3D | G3DSA:2.60.110.10 | Thaumatin | 84 | 296 | 7.0E-51 | IPR037176 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 606 | 4.0E-19 | - |
| SMART | SM00205 | tha2 | 103 | 296 | 1.3E-18 | IPR001938 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 413 | 642 | 14.859795 | IPR000719 |
| ProSiteProfiles | PS51367 | Thaumatin family profile. | 120 | 296 | 26.087805 | IPR001938 |
| ProSitePatterns | PS00316 | Thaumatin family signature. | 135 | 151 | - | IPR017949 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 419 | 441 | - | IPR017441 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 121 | 132 | 3.9E-6 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 286 | 295 | 3.9E-6 | IPR001938 |
| PRINTS | PR00347 | Pathogenesis-related protein signature | 175 | 191 | 3.9E-6 | IPR001938 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23140.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 6. Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021719634.1 | cysteine-rich receptor-like protein kinase 15 [Chenopodium quinoa] | 0 |
| Q9C5S9 | Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M241 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22061 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40868, Sbi_jg40875 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1602, Seu_jg1603, Seu_jg4259 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017178 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl46180, Sgl46197, Sgl50876, Sgl50880, Sgl50932 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010508, gene:ENSEOMG00000031315 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0002470, CQ.Regalona.r1.8BG0002450 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1797, evm.TU.LG18.811, evm.TU.LG20.1079 ... |