halophFGD

Basic Information

Locus ID: Sgl50818

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Short Name: SPT16

Description: FACT complex subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB5	57422261	57428563	-	Sgl50818

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.29	138,523.41 Da	41.11	86.46	-0.40

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01091	CDC68-like	189	428	4.84071E-89	IPR033825
Pfam	PF00557	Metallopeptidase family M24	240	421	2.8E-28	IPR000994
Pfam	PF13041	PPR repeat family	473	521	2.7E-17	IPR002885
Pfam	PF08644	FACT complex subunit (SPT16/CDC68)	702	856	1.9E-48	IPR013953
Pfam	PF12854	PPR repeat	540	569	1.9E-10	IPR002885
Pfam	PF08512	Histone chaperone Rttp106-like	981	1066	2.1E-17	IPR013719
Pfam	PF14826	FACT complex subunit SPT16 N-terminal lobe domain	15	175	5.2E-46	IPR029148
Pfam	PF01535	PPR repeat	582	611	0.0074	IPR002885
SUPERFAMILY	SSF55920	Creatinase/aminopeptidase	222	449	2.36E-29	IPR036005
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	461	562	1.1E-31	IPR011990
Gene3D	G3DSA:2.30.29.210	FACT complex subunit Spt16p/Cdc68p	677	803	5.7E-34	-
Gene3D	G3DSA:2.30.29.30	-	971	1101	6.7E-56	IPR011993
Gene3D	G3DSA:3.90.230.10	Creatinase/methionine aminopeptidase superfamily	182	443	2.2E-60	IPR036005
Gene3D	G3DSA:3.40.350.10	-	14	181	4.2E-53	IPR029149
Gene3D	G3DSA:2.30.29.150	-	804	960	3.3E-58	-
SMART	SM01286	SPT16_2	702	856	1.6E-73	IPR013953
SMART	SM01287	Rtt106_2	978	1068	5.4E-36	IPR013719
SMART	SM01285	FACT_Spt16_Nlob_2	15	177	1.0E-65	IPR029148
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	477	509	2.4E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	582	614	8.0E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	546	576	1.2E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	511	544	3.8E-6	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	544	578	12.013642	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	509	543	10.917512	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	474	508	14.227825	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	1104	1216	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	653	677	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1104	1157	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1158	1186	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K20093 (DNA excision repair protein ERCC-6-like [EC:5.6.2.-])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G10710.1	global transcription factor C. encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.
RefSeq	XP_010674525.1	FACT complex subunit SPT16 isoform X1 [Beta vulgaris subsp. vulgaris]
Swiss-Prot	O82491	FACT complex subunit SPT16 OS=Arabidopsis thaliana OX=3702 GN=SPT16 PE=1 SV=1
TrEMBL	A0A803L4L0	FACT complex subunit OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg26490, jg28277, jg30002, jg30003
Aizoaceae	Mesembryanthemum crystallinum	1	gene_10261
Amaranthaceae	Atriplex hortensis	1	Ah005364
Amaranthaceae	Beta vulgaris	1	BVRB_4g079740
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg17590, Sbi_jg62262
Amaranthaceae	Salicornia europaea	1	Seu_jg839
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007391
Amaranthaceae	Suaeda glauca	11	Sgl14225, Sgl14407, Sgl19371, Sgl19576, Sgl19577, Sgl45926 ... Sgl46116, Sgl46118, Sgl50626, Sgl50745, Sgl50818
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000009507, gene:ENSEOMG00000029745 ... gene:ENSEOMG00000036140, gene:ENSEOMG00000040456
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.1AG0000310, CQ.Regalona.r1.4AG0004890 ... CQ.Regalona.r1.4BG0004860
Anacardiaceae	Pistacia vera	1	pistato.v30095750
Apiaceae	Apium graveolens	4	Ag1G00560, Ag2G00322, Ag6G02010, Ag6G02871
Arecaceae	Cocos nucifera	2	COCNU_01G002440, COCNU_12G001840
Arecaceae	Phoenix dactylifera	2	gene-LOC103713979, gene-LOC103717831
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2247.V1.1, AsparagusV1_07.2829.V1.1
Asteraceae	Flaveria trinervia	1	Ftri11G21229
Brassicaceae	Arabidopsis thaliana	2	AT4G10670.1, AT4G10710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028377m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g06780.v2.2
Brassicaceae	Brassica nigra	3	BniB05g041080.2N, BniB05g058310.2N, BniB08g051870.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0475, Ceq06G0476
Casuarinaceae	Casuarina glauca	2	Cgl06G0486, Cgl06G0487
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g04020
Dunaliellaceae	Dunaliella salina	1	Dusal.0167s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g00020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8272
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1651, evm.TU.LG03.1652
Plantaginaceae	Plantago ovata	1	Pov_00038171
Plumbaginaceae	Limonium bicolor	2	Lb1G06698, Lb1G06711
Poaceae	Echinochloa crus-galli	4	AH05.3378, AH09.531, BH01.4725, BH09.679
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_4AG0322830, gene-QOZ80_4BG0356180 ... gene-QOZ80_5BG0437080
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0104510.1.CDS1 ... HORVU.MOREX.r3.7HG0666350.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_021674, gene-QYE76_021696, gene-QYE76_030380 ... gene-QYE76_032439, gene-QYE76_041451, gene-QYE76_041479, gene-QYE76_042696
Poaceae	Oryza coarctata	3	Oco07G002930, Oco08G003260, Oco23G005990
Poaceae	Oryza sativa	3	LOC_Os04g25550.1, LOC_Os08g31240.1, LOC_Os12g26030.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G130800, gene-BS78_10G036900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0107714
Poaceae	Sporobolus alterniflorus	2	Chr23G015870, Chr26G004020
Poaceae	Thinopyrum elongatum	5	Tel2E01G054000, Tel2E01G054900, Tel2E01G055400 ... Tel2E01G155700, Tel7E01G345800
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG007560, gene_TRIDC2BG002050 ... gene_TRIDC2BG008920, gene_TRIDC7AG023290, gene_TRIDC7BG013760
Poaceae	Triticum aestivum	7	TraesCS2A02G017400.1, TraesCS2A02G069500.1.cds1 ... TraesCS2B02G082700.1.cds1, TraesCS2D02G068300.1.cds1, TraesCS7A02G187500.1, TraesCS7B02G092700.1.cds1, TraesCS7D02G188500.1.cds1
Poaceae	Zea mays	1	Zm00001eb229990_P001
Poaceae	Zoysia japonica	5	nbis-gene-49057, nbis-gene-49081, nbis-gene-49759 ... nbis-gene-58697, nbis-gene-8025
Poaceae	Zoysia macrostachya	2	Zma_g19462, Zma_g21080
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.1261, evm.TU.LG08.1263, evm.TU.LG22.166 ... evm.TU.LG22.168
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g00880
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.26, evm.TU.Scaffold_1_RagTag.27 ... evm.TU.Scaffold_2_RagTag.2128
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-2860, nbisL1-mrna-2936, nbisL1-mrna-8255
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3800, nbisL1-mrna-7793
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13634, nbisL1-mrna-5124
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000012l.12, evm.TU.utg000009l.12
Rhizophoraceae	Kandelia obovata	2	Maker00006202, Maker00011133
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-13027, nbisL1-mrna-19927
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-16095, nbisL1-mrna-24
Salicaceae	Populus euphratica	5	populus_peu13175, populus_peu13176, populus_peu13177 ... populus_peu15566, populus_peu15567
Solanaceae	Lycium barbarum	2	gene-LOC132598495, gene-LOC132598497
Solanaceae	Solanum chilense	3	SOLCI003275300, SOLCI003275400, SOLCI007501600
Solanaceae	Solanum pennellii	3	gene-LOC107002544, gene-LOC107004067, gene-LOC107008231
Tamaricaceae	Reaumuria soongarica	1	STRG.32274_chr09_-
Tamaricaceae	Tamarix chinensis	1	TC02G1430
Zosteraceae	Zostera marina	1	Zosma04g04850.v3.1