Basic Information
Locus ID:
Sgl50646
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 56182992 | 56191583 | + | Sgl50646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 68,028.28 Da | 41.63 | 71.75 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 337 | 616 | 2.07918E-59 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 581 | 615 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 498 | 531 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 451 | 0.004 | IPR001680 |
| Pfam | PF08513 | LisH | 18 | 37 | 9.6E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 365 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 407 | 6.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 328 | 615 | 2.33E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 458 | 9.8E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 459 | 616 | 2.3E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 411 | 451 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 531 | 4.2E-6 | IPR001680 |
| SMART | SM00667 | Lish | 9 | 41 | 2.5E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 326 | 365 | 6.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 490 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 574 | 4.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 616 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 368 | 407 | 5.7E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 416 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 9 | 41 | 9.794151 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 584 | 616 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 584 | 616 | 12.604675 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 453 | 9.493783 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 375 | 407 | 11.65559 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 374 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 333 | 368 | 9.203785 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 460 | 11.64467 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 190 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_010686452.1 | transcriptional corepressor LEUNIG isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology