Basic Information
Locus ID:
Sgl50588
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 55783789 | 55791773 | + | Sgl50588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 113,859.61 Da | 55.00 | 78.21 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 245 | 379 | 2.03337E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 269 | 377 | 3.7E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 918 | 984 | 6.7E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 917 | 990 | 3.97E-14 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 147 | 405 | 2.47E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 787 | 847 | 1.82E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 787 | 862 | 1.6E-5 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 917 | 988 | 9.6E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 147 | 409 | 4.4E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 917 | 985 | 5.6E-8 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 784 | 848 | 5.9E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 214 | 388 | 2.0E-11 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 916 | 986 | 13.543339 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 812 | 849 | 10.144657 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 153 | 401 | 15.525204 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 993 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 899 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 744 | 767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 743 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 908 | - | - |
| Coils | Coil | Coil | 830 | 850 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNK5 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_159350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology