Basic Information
Locus ID:
Sgl50552
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 55511895 | 55526541 | + | Sgl50552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 134,959.72 Da | 48.74 | 77.00 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 492 | 795 | 2.45067E-87 | - |
| CDD | cd18793 | SF2_C_SNF | 1068 | 1175 | 2.42519E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1064 | 1165 | 3.1E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 512 | 873 | 5.1E-68 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 910 | 946 | 8.6E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 478 | 795 | 1.27E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 907 | 954 | 2.16E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 804 | 1222 | 4.3E-59 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 904 | 994 | 1.1E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 810 | 1222 | 4.3E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 466 | 651 | 6.0E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 683 | 796 | 3.7E-26 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1082 | 1165 | 1.2E-19 | IPR001650 |
| SMART | SM00487 | ultradead3 | 488 | 774 | 1.5E-26 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 910 | 946 | 10.202563 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 507 | 757 | 13.703083 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1059 | 1213 | 15.886682 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 925 | 934 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 679 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology