Basic Information
Locus ID:
Sgl50546
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 55454359 | 55463666 | + | Sgl50546 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 182,196.05 Da | 37.56 | 85.50 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 96 | 207 | 2.6E-5 | IPR005162 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 31 | 76 | 7.0E-11 | IPR029472 |
| Pfam | PF12937 | F-box-like | 1230 | 1263 | 1.5E-8 | IPR001810 |
| Pfam | PF00665 | Integrase core domain | 611 | 711 | 2.8E-11 | IPR001584 |
| Pfam | PF08268 | F-box associated domain | 1422 | 1515 | 5.1E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 1223 | 1272 | 4.58E-11 | IPR036047 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 613 | 781 | 4.43E-37 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 604 | 790 | 6.8E-37 | IPR036397 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1208 | 1265 | 2.7E-10 | - |
| SMART | SM00256 | fbox_2 | 1229 | 1268 | 1.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1318 | 1550 | 3.4E-34 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 948 | 1160 | 1.7E-23 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1223 | 1272 | 10.557245 | IPR001810 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 597 | 774 | 19.320152 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 909 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 918 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QY55 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_127200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10961 |
| Amaranthaceae | Suaeda glauca | 13 | Sgl03301, Sgl07869, Sgl08373, Sgl10700, Sgl16034, Sgl34010 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0008630 |