Basic Information
Locus ID:
Sgl50534
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 55366544 | 55375874 | + | Sgl50534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 83,815.89 Da | 45.63 | 79.23 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 253 | 1.45299E-63 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 43 | 0.054 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 1.9E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.0058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 6.9E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 601 | 758 | 1.0E-49 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 293 | 1.03E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 259 | 1.4E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 132 | 4.6E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 2.4E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 5.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.7E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 10.284687 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.632853 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.626528 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.314676 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.017362 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 3.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 3.5E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 3.5E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 761 | 19.18284 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 502 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021860218.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X4 [Spinacia oleracea] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QAM5 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_206220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology