Basic Information
Locus ID:
Sgl50493
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 55128922 | 55132936 | - | Sgl50493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 65,481.70 Da | 48.36 | 91.97 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 19 | 59 | 9.4E-21 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 78 | 124 | 2.0E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 36 | 547 | 1.88E-34 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 57 | 9.2E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 58 | 583 | 3.1E-169 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 325 | 348 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 141 | 166 | 38.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 466 | 25.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 21 | 62 | 0.0011 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 116 | 140 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 383 | 407 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 492 | 516 | 33.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2R4K3H6 | F-box protein OS=Bassia scoparia OX=83154 GN=AFB6 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology