Basic Information
Locus ID:
Sgl50425
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 54704603 | 54705607 | + | Sgl50425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 38,476.85 Da | 37.88 | 86.98 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 44 | 3.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 48 | 1.44E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 280 | 3.61E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 57 | 3.3E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 121 | 317 | 2.0E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 42 | 9.232525 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050113686.1 | putative F-box/FBD/LRR-repeat protein At4g03220 isoform X6 [Malus sylvestris] | 0 |
| TrEMBL | A0A540LR52 | F-box domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_025477 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 2 | Sgl45667, Sgl50425 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0006980, CQ.Regalona.r1.8BG0003410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1579 |