Basic Information
Locus ID:
Sgl50400
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 54436897 | 54439610 | + | Sgl50400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 94,533.85 Da | 45.41 | 91.72 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 21 | 288 | 2.76457E-55 | - |
| CDD | cd06222 | RNase_H_like | 671 | 790 | 5.93486E-28 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 477 | 561 | 4.8E-13 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 27 | 287 | 6.0E-43 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 671 | 792 | 1.5E-21 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 670 | 796 | 1.52E-13 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 24 | 254 | 6.78E-13 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 668 | 796 | 3.9E-14 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 7 | 288 | 16.173262 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_021857848.1 | uncharacterized protein LOC110797061 [Spinacia oleracea] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9HTG4 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||