Basic Information
Locus ID:
Sgl50374
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 54186245 | 54203930 | - | Sgl50374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 196,085.06 Da | 46.50 | 81.42 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1044 | 1110 | 3.2E-11 | IPR001245 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 385 | 523 | 7.1E-25 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 1325 | 1405 | 3.9E-9 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1502 | 1566 | 2.6E-9 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1570 | 1673 | 7.6E-9 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 947 | 1027 | 4.4E-12 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 29 | 127 | 9.2E-18 | IPR002902 |
| Pfam | PF00098 | Zinc knuckle | 595 | 610 | 6.5E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 905 | 919 | 0.0015 | IPR001878 |
| Pfam | PF01657 | Salt stress response/antifungal | 158 | 239 | 1.0E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 1197 | 1295 | 1.1E-19 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1486 | 1694 | 1.23E-36 | IPR011009 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 577 | 616 | 5.93E-6 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 900 | 925 | 1.27E-5 | IPR036875 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 932 | 1150 | 3.51E-47 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 1312 | 1410 | 4.8E-17 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 141 | 243 | 3.6E-18 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 22 | 130 | 1.8E-22 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 1191 | 1298 | 3.6E-25 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 939 | 1016 | 2.4E-29 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1459 | 1565 | 4.7E-34 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 590 | 634 | 1.2E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1566 | 1679 | 4.2E-16 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1021 | 1167 | 1.1E-24 | - |
| SMART | SM00343 | c2hcfinal6 | 904 | 920 | 8.9E-4 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 595 | 611 | 0.0029 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 596 | 610 | 9.48789 | IPR001878 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1304 | 1410 | 14.986201 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1192 | 1298 | 19.919598 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 136 | 243 | 16.724205 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1499 | 1735 | 11.495902 | IPR000719 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 905 | 920 | 9.998857 | IPR001878 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 24 | 130 | 18.996283 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 941 | 1154 | 12.994106 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1505 | 1527 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1713 | 1735 | - | - |
| Coils | Coil | Coil | 737 | 785 | - | - |
| Coils | Coil | Coil | 827 | 847 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_006449119.2 | uncharacterized protein LOC18052709 [Citrus clementina] | 0 |
| O65468 | Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CRK8 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6N2NAX6 | Cysteine-rich receptor-like protein kinase 10 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS492020 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |