Basic Information
Locus ID:
Sgl50223
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 52582523 | 52584022 | - | Sgl50223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 57,181.73 Da | 44.41 | 94.21 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 372 | 493 | 3.63651E-18 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 170 | 255 | 3.9E-19 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 374 | 494 | 3.8E-14 | IPR002156 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 369 | 496 | 8.47E-9 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 369 | 497 | 1.1E-11 | IPR036397 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021857984.1 | uncharacterized protein LOC110797194 [Spinacia oleracea] | 0 |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |