Basic Information
Locus ID:
Sgl50189
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 52279118 | 52279957 | - | Sgl50189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 32,221.41 Da | 44.78 | 81.33 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 212 | 272 | 2.0E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 276 | 1.34E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 173 | 278 | 5.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 213 | 271 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 213 | 272 | 11.013978 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021866525.1 | uncharacterized RING finger protein ZK637.14-like [Spinacia oleracea] | 0 |
| TrEMBL | A0A1U7W2Q8 | E3 ubiquitin-protein ligase RING1-like OS=Nicotiana sylvestris OX=4096 GN=LOC104222002 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004701 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl45396, Sgl50189, Sgl54774, Sgl60077 |