Basic Information
Locus ID:
Sgl49356
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 38113676 | 38144205 | - | Sgl49356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 88,000.30 Da | 46.33 | 85.52 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 624 | 685 | 1.46092E-11 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 623 | 684 | 2.1E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 229 | 343 | 1.9E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 111 | 369 | 2.0E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 623 | 685 | 1.03E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 115 | 375 | 1.2E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 619 | 692 | 1.6E-9 | - |
| SMART | SM00358 | DRBM_3 | 622 | 686 | 2.5E-10 | IPR014720 |
| SMART | SM00577 | forpap2 | 177 | 353 | 6.6E-9 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 118 | 366 | 15.809887 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 621 | 687 | 13.00926 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 762 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021854600.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Spinacia oleracea] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RJ10 | protein-serine/threonine phosphatase OS=Spinacia oleracea OX=3562 GN=SOVF_067230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology