halophFGD

Basic Information

Locus ID: Sgl49024

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Retroviral aspartyl protease

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB5	30497878	30516655	-	Sgl49024

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.53	124,931.09 Da	40.06	74.34	-0.62

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01647	RT_LTR	754	903	1.71012E-73	-
CDD	cd09274	RNase_HI_RT_Ty3	968	1081	3.20704E-49	-
CDD	cd00303	retropepsin_like	565	654	8.09461E-15	-
Pfam	PF17917	RNase H-like domain found in reverse transcriptase	962	1055	5.0E-28	IPR041373
Pfam	PF08284	Retroviral aspartyl protease	545	674	1.8E-28	-
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	770	919	4.6E-22	IPR000477
Pfam	PF03732	Retrotransposon gag protein	294	387	6.4E-13	IPR005162
SUPERFAMILY	SSF56672	DNA/RNA polymerases	694	1066	2.11E-139	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	559	654	7.31E-6	IPR021109
Gene3D	G3DSA:3.30.70.270	-	917	1083	5.1E-19	IPR043128
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	716	855	1.2E-75	-
Gene3D	G3DSA:2.40.70.10	Acid Proteases	548	679	1.7E-13	IPR021109
Gene3D	G3DSA:3.30.70.270	-	795	916	1.2E-75	IPR043128
ProSiteProfiles	PS50878	Reverse transcriptase (RT) catalytic domain profile.	751	938	8.855118	IPR000477
MobiDBLite	mobidb-lite	consensus disorder prediction	128	154	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	128	166	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	431	451	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	434	451	-	-

Best hit

Source	Best Hit ID	Description
RefSeq	XP_021754918.1	uncharacterized protein LOC110720219 [Chenopodium quinoa]
Swiss-Prot	P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	A2I5E5	RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	144	Sgl00054, Sgl00059, Sgl00122, Sgl00123, Sgl00785, Sgl03218 ... Sgl03679, Sgl03687, Sgl03723, Sgl03991, Sgl03993, Sgl04037, Sgl04361, Sgl04545, Sgl04569, Sgl04770, Sgl04822, Sgl04824, Sgl04939, Sgl05054, Sgl05127, Sgl05190, Sgl05796, Sgl08539, Sgl08580, Sgl08790, Sgl08798, Sgl08830, Sgl09430, Sgl09591, Sgl09616, Sgl09814, Sgl09873, Sgl10006, Sgl10108, Sgl13177, Sgl13755, Sgl14041, Sgl14184, Sgl18330, Sgl18480, Sgl19162, Sgl19200, Sgl19418, Sgl19458, Sgl19545, Sgl20479, Sgl20541, Sgl20748, Sgl21403, Sgl21838, Sgl22031, Sgl25859, Sgl25920, Sgl26130, Sgl26728, Sgl27312, Sgl30940, Sgl31162, Sgl32072, Sgl32092, Sgl32156, Sgl32313, Sgl32394, Sgl32643, Sgl32876, Sgl32884, Sgl36504, Sgl36546, Sgl37358, Sgl37387, Sgl37610, Sgl37693, Sgl37935, Sgl38147, Sgl43535, Sgl44020, Sgl44110, Sgl44120, Sgl44521, Sgl44576, Sgl44829, Sgl45070, Sgl46105, Sgl47766, Sgl48331, Sgl48789, Sgl48877, Sgl49024, Sgl49287, Sgl49294, Sgl49339, Sgl49591, Sgl49839, Sgl50799, Sgl52998, Sgl53097, Sgl53337, Sgl53592, Sgl53793, Sgl53890, Sgl58273, Sgl58399, Sgl58853, Sgl58868, Sgl59058, Sgl59221, Sgl64584, Sgl65072, Sgl65136, Sgl65556, Sgl69033, Sgl69559, Sgl69651, Sgl69879, Sgl71961, Sgl71964, Sgl72009, Sgl72023, Sgl72113, Sgl72177, Sgl72187, Sgl72319, Sgl74411, Sgl75527, Sgl75571, Sgl75720, Sgl75740, Sgl75751, Sgl77963, Sgl78783, Sgl78923, Sgl79041, Sgl79422, Sgl79476, Sgl79562, Sgl79692, Sgl79825, Sgl81252, Sgl81496, Sgl81889, Sgl81952, Sgl82030, Sgl82151