Basic Information
Locus ID:
Sgl48935
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 28826720 | 28853623 | - | Sgl48935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 104,109.50 Da | 41.49 | 91.00 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 753 | 910 | 1.97824E-58 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 312 | 909 | 4.9E-87 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 38 | 138 | 9.3E-20 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 38 | 138 | 4.84E-20 | IPR035927 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 155 | 230 | 6.99E-5 | IPR029071 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 911 | 1.96E-106 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 296 | 536 | 2.1E-66 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 236 | 1.3E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 24 | 150 | 2.3E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 634 | 916 | 8.0E-55 | - |
| SMART | SM00695 | dusp | 29 | 140 | 1.0E-15 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 912 | 56.955029 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 10 | 137 | 15.261806 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 854 | 871 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_010684133.1 | ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QI07 | Ubiquitin carboxyl-terminal hydrolase OS=Spinacia oleracea OX=3562 GN=SOVF_183250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology