Basic Information
Locus ID:
Sgl48776
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Protein FAR1-RELATED SEQUENCE 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 24143122 | 24154066 | + | Sgl48776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 69,438.86 Da | 37.06 | 69.48 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03101 | FAR1 DNA-binding domain | 112 | 200 | 9.4E-17 | IPR004330 |
| ProSiteProfiles | PS50966 | Zinc finger SWIM-type profile. | 359 | 395 | 9.396204 | IPR007527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 600 | - | - |
| Coils | Coil | Coil | 578 | 598 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048498353.1 | protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A484N1W4 | Protein FAR1-RELATED SEQUENCE OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS35770 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00014604, GOSA_00014605, GOSA_00014807, GOSA_00023619 |
| Amaranthaceae | Suaeda glauca | 69 | Sgl00340, Sgl00670, Sgl00740, Sgl00768, Sgl02587, Sgl03588 ... |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37147, Lb3G20849, Lb6G29885 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.16888_chr09_+, STRG.24247_chr10_+ |