Basic Information
Locus ID:
Sgl48695
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 22707181 | 22707791 | + | Sgl48695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.69 | 12,281.93 Da | 30.21 | 84.53 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 70 | 2.63E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 78 | 3.6E-19 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_022852980.1 | coatomer subunit alpha-2-like [Olea europaea var. sylvestris] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A426YYT5 | WD_REPEATS_REGION domain-containing protein OS=Ensete ventricosum OX=4639 GN=B296_00020786 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 4 | Sgl43929, Sgl43938, Sgl48695, Sgl48702 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047220, pistato.v30159560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004000 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017100.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g36000 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10250 |