Basic Information
Locus ID:
Sgl48480
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 19263308 | 19268434 | + | Sgl48480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 35,878.22 Da | 57.90 | 80.58 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16531 | RING-HC_RING1_like | 154 | 194 | 2.22985E-23 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 153 | 193 | 3.2E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 226 | 6.63E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 217 | 2.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 193 | 9.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 194 | 12.223724 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 170 | 179 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 308 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G44280.3 | - | 0 |
| RefSeq | XP_048138945.1 | putative E3 ubiquitin-protein ligase RING1a isoform X3 [Rhodamnia argentea] | 0 |
| Q9FKW0 | Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana OX=3702 GN=RING1A PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9AXH8 | RING-type domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||