Basic Information
Locus ID:
Sgl48465
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
leucine-rich repeat receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 19120800 | 19139049 | - | Sgl48465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 60,022.51 Da | 35.59 | 85.29 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 65 | 155 | 6.45703E-9 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 73 | 155 | 3.2E-10 | IPR002156 |
| Pfam | PF00069 | Protein kinase domain | 339 | 423 | 1.7E-12 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 326 | 530 | 1.66E-26 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 418 | 513 | 8.0E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 299 | 413 | 5.8E-38 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 338 | 546 | 15.26968 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 344 | 366 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23130.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 5. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021730926.1 | cysteine-rich receptor-like protein kinase 5 [Chenopodium quinoa] | 0 |
| Q9C5S8 | Cysteine-rich receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=CRK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MST2 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg23877, Sbi_jg23880, Sbi_jg23881, Sbi_jg23882 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg12317, Seu_jg12318, Seu_jg12319, Seu_jg12322 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl43696, Sgl48465, Sgl52016, Sgl52017, Sgl52041, Sgl57319 ... |