Basic Information
Locus ID:
Sgl48425
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Plant transposase (Ptta/En/Spm family)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 18445253 | 18448131 | + | Sgl48425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 54,570.50 Da | 58.79 | 58.67 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 296 | - | - |
| Coils | Coil | Coil | 155 | 175 | - | - |
| Coils | Coil | Coil | 195 | 215 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021734998.1 | uncharacterized protein LOC110701680 isoform X4 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MBK1 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg61541 |
| Amaranthaceae | Suaeda glauca | 65 | Sgl03681, Sgl04249, Sgl04994, Sgl04995, Sgl08792, Sgl09205 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0009940 |