Basic Information
Locus ID:
Sgl47537
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 8862776 | 8871613 | + | Sgl47537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 74,875.83 Da | 49.52 | 86.22 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 234 | 367 | 1.53437E-62 | - |
| CDD | cd17920 | DEXHc_RecQ | 26 | 233 | 1.01266E-99 | - |
| Pfam | PF16124 | RecQ zinc-binding | 371 | 442 | 1.1E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 213 | 3.8E-16 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 356 | 6.8E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 379 | 1.12E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 234 | 460 | 2.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 233 | 4.1E-81 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 242 | 3.5E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 277 | 358 | 4.5E-21 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 482 | 4.8E-139 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 226 | 20.751257 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 256 | 398 | 17.763916 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021858815.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Spinacia oleracea] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M8N9 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology