Basic Information
Locus ID:
Sgl47516
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 8715176 | 8722206 | + | Sgl47516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 43,033.72 Da | 44.55 | 72.29 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 246 | 320 | 8.53698E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 4.52223E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 3.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 248 | 313 | 1.6E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 235 | 324 | 4.7E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 57 | 205 | 1.15E-32 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 1.4E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 204 | 1.8E-9 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 223 | 324 | 7.7E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 247 | 316 | 4.7E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 199 | 3.9E-6 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 1.0E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.169811 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 246 | 320 | 15.016313 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 243 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_021756703.1 | oligouridylate-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QES4 | Oligouridylate-binding protein 1-like OS=Spinacia oleracea OX=3562 GN=SOVF_192880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology