Basic Information
Locus ID:
Sgl47173
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin protein ligase DRIP2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB5 | 6147191 | 6152228 | - | Sgl47173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 69,591.23 Da | 61.87 | 73.03 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 76 | 8.17E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 144 | 1.2E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 27 | 68 | 10.645153 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 254 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_028792195.1 | E3 ubiquitin protein ligase DRIP2-like [Prosopis alba] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7RCK3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_045464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25168, Sbi_jg9010 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19581 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42444, Sgl47173 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g12630.v2.2 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.507 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20398, nbis-gene-39672, nbis-gene-39673 |